Faster Filters for Approximate String Matching

نویسندگان

  • Juha Kärkkäinen
  • Joong Chae Na
چکیده

We introduce a new filtering method for approximate string matching called the suffix filter. It has some similarity with well-known filtration algorithms, which we call factor filters, and which are among the best practical algorithms for approximate string matching using a text index. Suffix filters are stronger, i.e., produce fewer false matches than factor filters. We demonstrate experimentally that suffix filters are faster in practice, too.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

New and faster filters for multiple approximate string matching

We present three new algorithms for on-line multiple string matching allowing errors. These are extensions of previous algorithms that search for a single pattern. The average running time achieved is in all cases linear in the text size for moderate error level, pattern length and number of patterns. They adapt (with higher costs) to the other cases. However, the algorithms diier in speed and ...

متن کامل

Approximate String Matching with Reduced Alphabet

We present a method to speed up approximate string matching by mapping the factual alphabet to a smaller alphabet. We apply the alphabet reduction scheme to a tuned version of the approximate Boyer– Moore algorithm utilizing the Four-Russians technique. Our experiments show that the alphabet reduction makes the algorithm faster. Especially in the k-mismatch case, the new variation is faster tha...

متن کامل

A Fast Algorithm for Approximate String Matching on Gene Sequences

Approximate string matching is a fundamental and challenging problem in computer science, for which a fast algorithm is highly demanded in many applications including text processing and DNA sequence analysis. In this paper, we present a fast algorithm for approximate string matching, called FAAST. It aims at solving a popular variant of the approximate string matching problem, the k-mismatch p...

متن کامل

Better Filtering with Gapped q-Grams

A popular and well-studied class of filters for approximate string matching compares substrings of length q, the q-grams, in the pattern and the text to identify text areas that contain potential matches. A generalization of the method that uses gapped q-grams instead of contiguous substrings is mentioned a few times in literature but has never been analyzed in any depth. In this paper, we repo...

متن کامل

BDD-Based Analysis of Gapped q-Gram Filters

Recently, there has been a surge of interest in gapped q-gram filters for approximate string matching. Important design parameters for filters are for example the value of q, the filter-threshold and in particular the shape (aka seed) of the filter. A good choice of parameters can improve the performance of a q-gram filter by orders of magnitude and optimising these parameters is a nontrivial c...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2007